Uncovering the Neuroscience of Imagination Using a Virtual Reality World for Rats

Imagination is often considered a uniquely human trait. Simply put, it is what allows us to think about things that aren’t happening in that moment, and it plays an integral part in our day-to-day lives. We use it when we think through our calendar for the day, consider restaurant options for dinner, or visualize the best route. It turns out this trait might not be as unique to humans as we thought. In fact, a study published in Science suggests that we might share this ability with rats (1).

Rats are the most divisive of rodents. Some people see disease-carrying scourges; some see intelligent, affectionate creatures with larger-than-life personalities; and still others simply can’t get past their bare tails and small eyes. Love them or hate them, science has shown that there is more to these creatures than meets the eye. They are intelligent, ticklish and empathetic; and the study in Science suggests, imaginative.

Continue reading “Uncovering the Neuroscience of Imagination Using a Virtual Reality World for Rats”

Shocking Revelation about Starfish Anatomy: Just a Head

Two starfish on the beach
Recent research reveals that starfish anatomy is even stranger than previously thought

Most animals in the world are what biologists refer to as “bilateral”—their left and right sides mirror one another. It is also typically easy to tell which part of most animals is the top and which is the bottom. The anatomical arrangements of certain other animals, however, are slightly more confounding, for instance in the case of echinoderms, which include sea urchins, sand dollars and starfish. These animals are “pentaradial”, with five identical sections of the body radiating from a central axis. The question of how these creatures evolved into such a state has been a puzzle pondered by many a biologist, with little progress made until recently. In a new study published in Nature, scientists closely examining the genetic composition of starfish point to some key evidence that suggests a starfish is mostly just a head.

Starfish are a deuterostome, belonging to the superphylum Deuterostomia. Most deuterostomes are bilateral, leading scientists to believe that, despite their peculiar body plan, starfish evolved from a bilateral ancestor. This is supported by the fact that starfish larvae actually start out bilateral, and eventually transform into the characteristic star shape. But where the head of the starfish is, or whether it even has one, has proved difficult for scientists to parse out, especially since their outward structure offers no real clues.

There have been a number of theories posited, such as the duplication hypothesis—where each of the five sections of a starfish could be considered “bilateral”, placing the head at the center—and the stacking hypothesis, which asserts that the body is stacked atop the head. In a bilateral body plan, anterior genes broadly code for the front, or the head-region, and posterior genes code for the trunk, or the “torso”, and tail. Researchers in this new study looked at the expression of these genes throughout the body plan as a possible source of clarity as to which part of the starfish is its head and which parts comprise the body.

To this end, researchers used advanced molecular and genetic sequencing techniques including RNA tomography and in situ hybridization. RNA tomography allowed them to create a three-dimensional map of gene expression throughout the limbs of the sea star Patiria miniate. In situ hybridization is a fluorescent staining technique that offered them a means by which to examine where exactly anterior or posterior genes are expressed in the sea star’s tissue, providing a clearer picture of genetic body patterning.

Remarkably, scientists found that anterior or head-coding genes were expressed in the starfish’s skin, including head-like regions appearing in the center, or midline, of each arm, while tail-coding genes were only seen at the outer edges of the arms. Perhaps even more remarkable was the lack of genetic patterning accounting for a trunk or torso, leading scientists to the conclusion that starfish are, for the most part, just heads.

Whether this holds true for other echinoderms remains to be proven, and further investigations into starfish anatomy may seek to pinpoint where in the timeline the trunk was lost. Overall, research like this helps scientists understand how life came to look the way it does. Oddly shaped creatures like the humble starfish can offer insight into the strange evolutionary processes that result in such rich biodiversity across the animal kingdom.


Works cited:

  1. ‘A disembodied head walking about the sea floor on its lips’: Scientists finally work out what a starfish is | Live Science
  2. Molecular evidence of anteroposterior patterning in adult echinoderms | Nature
  3. Starfish Are Heads–Just Heads – Scientific American
  4. Study reveals location of starfish’s head | Stanford News

COVID-19 and Type 1 Diabetes: Exploring the Potential Link

Prior to the COVID-19 pandemic, the incidence of adolescent type 1 diabetes was steadily increasing at a rate of 1.9% per year in the United States and 3-4% per year in European countries (3,7). Since the pandemic, however, several studies have reported an unprecedented surge in type 1 diabetes in children and teenagers.

Continue reading “COVID-19 and Type 1 Diabetes: Exploring the Potential Link”

Reviewing the Importance of circRNA

In recent years following the COVID-19 pandemic, RNA has gained attention for its successes and potential use in vaccines and therapeutics. One avenue of interest in RNA research is a non-coding class of RNA first identified almost 50 years ago, circular RNA (circRNA).

In 1976, Sanger et al. first identified circRNA in plant viroids, and later additions to the field found them in mice, humans, nematodes, and other groups. Unlike linear RNA, circRNA are covalently closed loops that don’t have a 5′ cap or 3′ polyadenylated tail. Following its discovery, researchers thought circRNA was the product of a rare splicing event caused by an error in mRNA formation leading to low interest in researching the subject (1).

In the early 2010s, following the development of high throughput RNA sequencing technology, Salzman et al. determined that circRNAs were not a result of misplicing, but a stable, conserved, and widely sourced form of RNA with biological importance. Since noncoding RNA makes up the majority of the transcriptome it’s an incredibly important field of study. We now recognize circRNAs for their potential as disease biomarkers and importance in researching human disease (2).

Continue reading “Reviewing the Importance of circRNA”

Can AI Help You Develop a Research Proposal?

Integrating artificial intelligence (AI) into the process of scientific research offers a wealth of efficiency-boosting tools that are transforming the ways scientists can approach their work. Many are already using AI to refine code, automate data processing, and edit papers, presentations, abstracts and more. Personally, I find generative language models like ChatGPT to be invaluable “editorial assistants” in my work as a science writer, helping me work through wonky sentence structures, be more concise and get over writer’s block, to name a few applications.

An AI-generated image of a man in a white lab coat who has a thoughtful look on his face. He is looking off camera with his hand on his chin. The background is a field of light bursts and bright lines against a dark backdrop.
Image generated using Adobe Firefly

But a scientist’s work doesn’t only involve writing or analyzing data, making presentations or keeping up with the literature. An essential component of any research scientist’s skillset is their ability to develop entirely new ideas and novel research proposals. Coming up with research questions and plans is a central component of graduate education and research careers, both in academia and industry.

As AI continues to advance and find broader use, a critical question arises: Can AI play a pivotal role in the creative process of developing entirely new ideas, such as crafting novel research proposals?

Continue reading “Can AI Help You Develop a Research Proposal?”

Small RNA Transfection: How Small Players Can Make a Big Impact

When looking at small aspects of living things, especially cells, it can often be difficult to fully grasp the magnitude of regulation employed within them. We first learn the central dogma in high school biology. This is the core concept that DNA makes RNA and RNA makes protein. Despite this early education, it can be lost on many the biological methods that are employed to regulate this process. This regulation is very important when one considers the disastrous things that can occur when this process goes askew, such as cancer, or dysregulated cell death. Therefor it is very important to understand how these regulatory mechanisms work and employ tools to better understand them.

Continue reading “Small RNA Transfection: How Small Players Can Make a Big Impact”

For Frogs, Surviving the Heat Could Come Down to What Is in Their Gut

Amphibians are the most threatened vertebrate class worldwide. Because they lack the ability to regulate their own temperature and moisture levels, climate change is playing a significant role in this growing peril (1). Climate change impacts amphibian survival in several ways. In addition to habitat loss, growing drought conditions make maintaining body moisture levels challenging and warming temperatures restrict activity periods needed for reproduction as well as increasing the risk of heat stress.

Heat tolerance varies by species, and understanding what influences these differences could help predict species survival. The gut microbiota is known to affect a wide range of functions in host animals, and recently studies have begun to investigate its role in host thermal tolerance (2).

Continue reading “For Frogs, Surviving the Heat Could Come Down to What Is in Their Gut”

Treating Solid Tumors: Combining CAR-T Cell Therapy with Probiotics

Chimeric Antigen Recepter (CAR)-T cell therapy is a personalized immunotherapy that harnesses the patient’s own immune system to combat cancer. It is done by engineering the patient’s T cells to specifically target and attack cancer cells in their body, and it has shown great success in treating various blood cancers such as leukemia.

Treating solid tumors with CAR-T cells, however, has proved much more challenging. This is mainly because solid tumors contain a heterogeneous population of cells, expressing a variety of antigens—many of which are also expressed in healthy cells. Therefore, T cells targeting solid tumors could potentially attack healthy tissue, resulting in serious side effects. In addition, solid tumors create a hostile microenvironment that is difficult for CAR-T cells to infiltrate.

Continue reading “Treating Solid Tumors: Combining CAR-T Cell Therapy with Probiotics”

Promega qPCR Grant Series #3: Immunotherapy Researcher, Dr. Sabrina Alves dos Reis 

Professional headshot image of Dr. Sabrina Alves dos Reis, subject of the blog post
Sabrina Alves dos Reis

In our third and final installment of the Promega qPCR Grant Recipient blog series, we highlight Dr. Sabrina Alves dos Reis, a trained immunotherapy researcher. Her work has focused on developing tools for more accessible cancer therapies using CAR-T cells. Here, we explore Dr. Alves dos Reis’ academic and scientific journeys, highlight influential mentorship and foreshadow her plans for the Promega qPCR grant funds. 

Dr. Alves dos Reis’ career began with a strong affinity for biology. As an undergraduate student, she pursued a degree in biological science, where she developed a foundational understanding for designing and developing research projects. As her passion for science heightened, she decided to continue her journey in science, culminating in a PhD at the Fundação Oswaldo Cruz Institute in Rio de Janeiro, Brazil. Her research projects focused on the unexplored territory of adipose tissue as a site for Mycobacterium leprae—or leprosy bacillus—infection. She mentioned that this work piqued her curiosity for improving immunotherapies and laid the foundation for her future in cancer research.  

Continue reading “Promega qPCR Grant Series #3: Immunotherapy Researcher, Dr. Sabrina Alves dos Reis “

Elevate Your Research: Exploring the Power of 8-Dye STR Chemistry with the Spectrum Compact CE System

In genetic research, staying at the forefront of technology is crucial. The latest breakthrough in human identification comes in the form of 8-dye Short Tandem Repeat (STR) chemistry. This innovation promises unprecedented precision and accuracy in DNA analysis, revolutionizing the way we approach genetic studies. In this blog post, we’ll delve into the world of 8-color chemistry and explore how it seamlessly integrates with the game-changing Spectrum Compact CE System.

Understanding 8-Dye STR Chemistry

The introduction of 8-dye chemistry expands the capability of STR analysis, enabling researchers to analyze more DNA markers with smaller amplicons, providing more robust data from degraded or inhibited DNA samples.  The performance of the 8-color dye chemistries from Promega on the Spectrum Compact CE System is sensitive, with both chemsitries (PowerPlex® 35 GY System and the upcoming PowerPlex® 18 E System) producing 100% profiles from their suggested inputs down to as little as 62.5 pg of DNA. The 18E system produced 100% profiles down to 31.25 pg of input DNA with minimal signal bleed through and low system noise.

Table showing percent STR profiles generated with decreasing input DNA using the PowerPlex 35GY or PowerPlex 18 E chemistry on the Spectrum Compact CE System
Table showing percent profiles generated with decreasing input DNA using the PowerPlex® 35GY or PowerPlex® 18E chemistry on the Spectrum Compact CE System.
Continue reading “Elevate Your Research: Exploring the Power of 8-Dye STR Chemistry with the Spectrum Compact CE System”