Microorganisms: Infectious Disease and Ecology

Blog entries about bacteria, viruses, fungi and other microorganisms.

Extreme Makeover, Epidemic Edition: Can Ants Modify Their Nests for Survival?  

Posted on by Shannon Sindermann
Ants on a hill

Imagine if your first instinct during an epidemic wasn’t to wear a mask or stock up on groceries, but instead to start rearranging and remodeling your house. As it turns out, researchers have found that black garden ants (Lasius niger) do exactly that when confronted with the threat of disease. These tiny architects instinctively spring into action, redesigning their nests in various ways to slow the spread of infection and protect their crowded colonies where diseases can easily spread.  

Read more about the research and see how these findings offer insights into how spatial changes – both in ants and potentially in human environments – can help limit the risks of infection.  

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Mpox—The Latest Zoonotic Virus Making Headlines

Posted on by Kelly Grooms

Mpox (formerly known as Monkeypox; 1) has been making the news lately. The declaration by the WHO Director-General naming mpox a public health emergency of international concern (PHEIC; 2) has a lot of people wondering what it is, how it spreads and how concerned they should be. Understandably, we are all a little jumpy when we start hearing about a new viral disease, but the virus that causes mpox (monkeypox virus) isn’t new.

Artists rendering of monkeypox on a torso.

A member of the Poxviridae family, the monkeypox virus is closely related to the variola virus that causes smallpox; however, monkeypox causes milder symptoms and is less fatal (1). While the virus gained its unfortunate name from its discovery in monkeys in 1958 (3), the original source of the disease remains unknown. The virus exists in a wide range of mammals including rodents, anteaters, hedgehogs, prairie dogs, squirrels and shrews (4) and can spread to humans through close contact with an infected individual or animal. Symptoms can include fever, headache, muscle and back pain, swollen lymph nodes, chills and exhaustion (3). The most distinguishing symptom is the blister-like rash.

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Ancient Retroviruses and Modern Cancer: Role of Endogenous Retroviruses in Transcriptional Changes in Tumor Cells 

Posted on by Michele Arduengo, PhD

Approximately 30 million years ago, a retrovirus integrated into the germline of a common ancestor of baboons, gorillas, chimpanzees and humans. That endogenous retrovirus, now known as gammaretrovirus human endogenous retrovirus 1 (HERV-1), may provide clues about the aberrant regulation of gene transcription that enables tumor cells to grow and survive.  

Understanding the Mechanism Behind Cancer Gene Expression 

Scientists have long described the striking differences in gene expression, signaling activity and metabolism between cancer cells and normal cells, but the underlying mechanisms that cause these differences are not fully understood. In a recent Science Advances article, published by Ivancevic et al., researchers from the University of Colorado, Boulder; the University of Colorado Anschutz Medical Campus, and the University of Colorado School of Medicine report their efforts to identify endogenous retrovirus elements that might be part of the answer to the complex question of what biological events are responsible for the changes in gene expression in cancer cells.  

The researchers hypothesized that transposable elements (TEs), specifically those associated with endogenous retroviruses could be involved in cancer-specific gene regulation.  Endogenous retroviruses (ERVs) are the remnants of ancient retroviral infections that have integrated into the germline of the host. 

The transposable element LTR10, derived from an endogenous retrovirus, can alter gene expression in a number of cancers. Artist's conception of an invasive cancer cell.

Identifying Endogenous Retrovirus Elements That Affect Cancer Gene Expression 

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Mind Control, Mutilation and Death. The Fungal Fate That Lurks in Waiting for Emerging Periodical Cicadas

Posted on by Kelly Grooms

For the first time since Thomas Jefferson was president, broods of 13- and 17-year periodical cicadas are emerging from the ground at the same time. The fate that awaits some of these periodic cicadas—a fungal infection that hijacks their behavior and destroys their genitalia — sounds like the script of a bad zombie horror film. The culprit (or villain) is the entomopathogenic fungus Massospora cicadina.  

An adult red eyed 17-year periodical cicada sits on a leaf

While most entomopathogens kill their host before releasing their infectious spores, M. cicadina is one of the few species that increase spore dispersal by hijacking their host’s behavior and keeping them alive while sporulating (1). The manner it uses to do this is both gruesome and fascinating. If you can stomach some details of insect sex and dismemberment, read on.

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Automated Sampling and Detection of ToBRFV: An Emerging Tomato Virus 

Posted on by Michele Arduengo, PhD
Tomatoes affected by a virus, showing the yellow and brown spots characteristic of ToBRFV.

In the Spring of 2015, greenhouse tomato plants grown in Jordan presented with a mosaic pattern of light and dark green patches on leaves, narrowing leaves, and yellow- and brown-spotted fruit (Salem et al. 2015). The pathogen was identified as a novel plant virus, the tomato brown rugose fruit virus (ToBRFV), and the original outbreak was traced back to the fall of 2014 to Israel (Luria et al. 2017).  This newly emerging virus can infect tomato and pepper plants at any stage of development and greatly affect crop yield and quality. Furthermore, the virus spreads rapidly by mechanical contact but can also be spread over long distances by contaminated seeds (Caruso et al. 2022), and as of 2022 it had been detected in 35 countries across four continents (Zhang et al. 2022).  Compounding its transmissibility, is the ability of the virus escape plant genetic resistance to viral infection (Zhang et al. 2022). There are seven host plants for the virus, including some common grasses and weeds, which could act as a reservoir for the virus, even if it is eliminated from commercial crops. Some researchers consider ToBRFV to be the most serious threat to tomato production in the world. 

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How Avian Influenza Crosses Species

Posted on by Johanna Lee

Avian influenza, commonly known as bird flu, has become an increasingly severe public health issue. According to the CDC, the frequency of avian influenza outbreaks and diversity of virus subtypes have increased significantly in the past decade. In 2022, there were reports of sporadic H5 virus infections in mammals across several U.S. states, Canada, and other countries. Affected animals included fox kits, bobcats, coyote pups, raccoons, skunks, mink, and even seals. Human cases of H5N6 and other subtypes following poultry exposures were reported in China, with several cases resulting in severe or critical illness and death.

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How do Self-Amplifying RNA Vaccines Work?

Posted on by Jordan Nutting

In late November 2023, regulatory authorities in Japan approved a new SARS-CoV-2 vaccine. Unlike earlier messenger RNA (mRNA) vaccines used to protect against COVID-19, this one relies on a technology called self-amplifying mRNA, or saRNA. Though researchers have long pursued saRNA-based vaccines, this represents the first full approval for the technology in humans and marks an exciting advance in the ongoing development of mRNA vaccines.

Continue reading for an overview of how saRNA vaccines work and some of their advantages relative to standard mRNA vaccines.

A syringe withdraws clear liquid from a sealed glass vial.
 A new type of COVID-19 mRNA vaccine, a self-amplifying RNA vaccine, was recently approved in Japan.
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Cyanobacteria Identified as Cause of Elephant Mass Mortality Event

Posted on by Kelly Grooms

The largest contiguous population of elephants in Africa lives in the Kavango-Zambezi Trans Frontier Conservation Area (KAZA TFCA) which encompasses parts of Botswana Zimbabwe, Zambia, Angola and Namibia. Within KAZA, nearly 90% of the elephant population is concentrated in Botswana (58%) and Zimbabwe (29%). In June of 2020, over 300 elephants were found dead in Botswana under mysterious circumstances. Less than two months later—in a span of only 27 days—34 more elephant deaths were reported in neighboring Zimbabwe. The news of these mass mortality events was both notable and concerning given the importance of the KAZA elephant metapopulation to species conservation.

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For Frogs, Surviving the Heat Could Come Down to What Is in Their Gut

Posted on by Kelly Grooms

Amphibians are the most threatened vertebrate class worldwide. Because they lack the ability to regulate their own temperature and moisture levels, climate change is playing a significant role in this growing peril (1). Climate change impacts amphibian survival in several ways. In addition to habitat loss, growing drought conditions make maintaining body moisture levels challenging and warming temperatures restrict activity periods needed for reproduction as well as increasing the risk of heat stress.

Heat tolerance varies by species, and understanding what influences these differences could help predict species survival. The gut microbiota is known to affect a wide range of functions in host animals, and recently studies have begun to investigate its role in host thermal tolerance (2).

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Promega qPCR Grant Series #3: Immunotherapy Researcher, Dr. Sabrina Alves dos Reis 

Posted on by Anna Bennett
Professional headshot image of Dr. Sabrina Alves dos Reis, subject of the blog post
Sabrina Alves dos Reis

In our third and final installment of the Promega qPCR Grant Recipient blog series, we highlight Dr. Sabrina Alves dos Reis, a trained immunotherapy researcher. Her work has focused on developing tools for more accessible cancer therapies using CAR-T cells. Here, we explore Dr. Alves dos Reis’ academic and scientific journeys, highlight influential mentorship and foreshadow her plans for the Promega qPCR grant funds. 

Dr. Alves dos Reis’ career began with a strong affinity for biology. As an undergraduate student, she pursued a degree in biological science, where she developed a foundational understanding for designing and developing research projects. As her passion for science heightened, she decided to continue her journey in science, culminating in a PhD at the Fundação Oswaldo Cruz Institute in Rio de Janeiro, Brazil. Her research projects focused on the unexplored territory of adipose tissue as a site for Mycobacterium leprae—or leprosy bacillus—infection. She mentioned that this work piqued her curiosity for improving immunotherapies and laid the foundation for her future in cancer research.  

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