Ancient RNA From a Woolly Mammoth?

Most of us first meet woolly mammoths as Manny from Ice Age (a gentle giant with main character energy) or as towering skeletons in museum halls. In the lab, though, mammoths can show up in many ways: such as fragile molecules preserved in permafrost for tens of thousands of years.

Woolly Mammoth

Ancient DNA has already helped scientists piece together mammoth genomes. Now scientists have done something wilder: they’ve pulled ancient RNA out of a ~39,000-year-old woolly mammoth and used it to see which genes were being expressed in its muscle tissue. In a new study, researchers showed that not only can woolly mammoth DNA survive tens of thousands of years in permafrost, but RNA, the fragile, quick-to-degrade “live feed” of the cell, can too.

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Solving the AAV Titer Challenge: A New Approach to Gene Therapy Workflows 

For the success of adeno-associated virus (AAV)-based gene therapies, accurate viral titration is non-negotiable. But as interest in AAVs as delivery vectors soars, so does the challenge of getting consistent, reproducible genome titers—a critical hurdle in biologics workflows where speed and standardization are paramount.

Impact of DNase Digestion on Accuracy

A recent peer-reviewed study pinpoints a surprising source of this variability: the DNase digestion, a common step used to remove contaminating DNA. “[DNase digestion]… led to a significant decrease in genome titers for several AAV serotypes,” the authors write,highlighting concerns around workflow reproducibility and data reliability.The research, published in Molecular Therapy: Methods & Clinical Development, demonstrates how different engineered AAV serotypes respond inconsistently to standard DNase treatment, significantly impacting final titer results. These findings are particularly relevant for scientists developing and optimizing cell and gene therapy platforms, where regulatory expectations for analytical precision continue to rise.

This study addresses the challenge of accurately measuring viral titers in engineered AAVs, which have enhanced transduction efficiency but exhibit lower yields when measured using traditional genome titering methods. Specifically, the authors explored the impact of DNase digestion on the stability of engineered AAV capsids that contain peptide insertions. Through a series of rigorous experiments including electron microscopy, quantitative PCR (qPCR) and digital droplet PCR (ddPCR), they found that the heat-inactivation step commonly used following DNase treatment to eliminate free-floating DNA can compromise the integrity of engineered AAV capsids.

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Growing Our Understanding of Triple-Negative Breast Cancer in Sub-Saharan Africa: Why Comprehensive Population Data Matters

A digitally rendered illustration of a cancer cell superimposed over the African continent. The cancer cell, with a textured, reddish-orange surface and extending tendrils, appears to spread across the dark red map of Africa, symbolizing the impact or presence of cancer on the continent.

In the genomics era, the promise of precision medicine and tailored diagnostics is only as good as the datasets, which makes it imperative that those sets reflect the diversity of the human population. Populations from the African continent, the most genomically diverse region in the world, are underrepresented in current genomic data sets.  Nowhere is closing this data gap more urgent than with triple-negative breast cancer (TNBC), which has a disproportionately high incidence in women of African descent and limited therapeutic options.

Highlighting why comprehensive population data is so important are the results of a recent study profiling of 30 TNBC tumor samples from Angola and Cape Verde (1).  Whole-exome sequencing (WES), enriched with untranslated regions (UTRs), showed that 86% of somatic variants in these samples had never been reported before. WES can be especially valuable when working with limited or degraded samples, such as the FFPE samples used in this study, because it allows you to gain valuable insights from samples that are impractical for whole-genome sequencing (WGS). This study’s results emphasize the value in expanding omics cancer research so that it includes all populations and areas of the genome.

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Tuberculosis Genome Mapping in Italy: How 2,520 Strains Are Shaping the Future of TB Surveillance

Tuberculosis (TB) remains one of the deadliest infectious diseases globally, with millions of new cases and over a million deaths each year. The rise of drug-resistant strains has only complicated treatment and control efforts, turning TB into a moving target for clinicians and public health officials alike. Understanding how TB spreads, evolves and becomes resistant requires more than just microscopes and cultures—it demands a detailed look at the bacterium’s genetic code.

Secondary tuberculosis in lungs and close-up view of Mycobacterium tuberculosis bacteria, 3D illustration
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Understanding Stress Resilience in Tomatoes: Insights Into the Role of PP2C Genes

An illustration of a tomato plant divided between normal and drought conditions. This study looks at the role of PP2C in stress response.

As climate change accelerates, understanding how crops survive environmental stress isn’t just an academic question—it’s a critical challenge for global food security. Tomatoes (Solanum lycopersicum), a staple crop worldwide, face increasing threats from drought, salinity, and extreme temperatures. But how do these plants adapt at the molecular level?

A recent study published in Scientific Reports ​investigated the evolutionary history, genomic diversity, and functional roles of protein phosphatase 2C (PP2C) genes in tomatoes (1). Instead of merely cataloging these genes, the researchers analyzed how PP2C gene expression changes under environmental stress. This information could help inform us about crop improvement strategies.

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From Fins to Genes: DNA Barcoding Unlocks Marine Diversity Along Mozambique’s Coast

DNA Barcding unlocks marine diversity along Mozambique's coast

The Mozambique Channel, which is located between the Madagascar and Mozambique on the African coast, is an important hot spot for biodiversity because its many coastal ecosystems provide a range of habitats that support diverse plant and animal species. Understanding the biodiversity of an ecosystem, particularly biodiversity hot spots, is important for many reasons. For marine systems, accurate classification and reporting of fish species supports fisheries research, natural resource surveys, forensic studies, conservation studies, and enables discovery of new or under-reported species. Studies have been limited along the west coast of Africa and are only now in their early stages.

A 2024 research study by Muhala and colleagues applied DNA barcoding to evaluate the composition of marine and coastal fish diversity from the Mozambican coast. In the study, the Wizard® Genomic DNA Purification Kit was used to extract DNA from both teleost (ray-finned) and elasmobranch (sharks, rays and skates) fish classes, with a total of 143 species sampled from local artisanal fisheries along the Mozambican coast. The samples were primarily composed of muscle or fin tissues, which are ideal for genetic analysis due to their higher DNA yield. These tissue samples were collected from various fish species captured along the coast of Mozambique, stored in ethanol (96%) to preserve DNA integrity, and then processed using the Wizard kit. Total genomic DNA was extracted from the muscle or fin tissues, as per the manufacturer’s protocol. This method ensures the isolation of high-quality genomic DNA, which is crucial for subsequent polymerase chain reaction (PCR) amplification and sequencing. The COI gene (cytochrome c oxidase subunit I) was targeted for DNA barcoding, enabling species identification and assessment of genetic diversity.

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The Largest Known Genome: Unveiling Nature’s Genetic Giant 

In genetics, sizes often come with surprises. One tiny fern, Tmesipteris oblanceolata, also known as the Fork Fern, proved this phrase true, taking the scientific community by storm when it broke the record for the largest known genome. Researchers reported this discovery on May 31, 2024, stating that the plant, which is small enough to fit in the palm of your hand, harbors a full set of genetic instructions over 50 times the size of the human genome.

Tropical rainforest in New Caledonia with ferns and moss-covered trees
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Revolutionizing Food Security: How Biotechnology Contributes to Sustainability and Safety

field of crops/food

Projections from the United Nations suggest that the global population reached 8 billion in 2022. By 2030, the United Nations expect the population will grow to 8.5 billion (1).  In order to sustain the rapidly expanding global population, innovative approaches in the agriculture sector are required to ensure food security and safety while maintaining sustainable practices.

Centuries of cultivating crops and raising livestock have honed our current agricultural methods. In the 21st century, these techniques encounter persistent challenges. Environmental factors such as soil degradation, water scarcity, and climate change pose significant threats to production. Additionally, the constant risks posed by pests and diseases can devastate both crops and livestock.

Read more about how the current avian flu crosses species and affects livestock.

The agriculture sector’s challenge of feeding the world sustainably lies in the limited access to natural resources like land and water. Unfortunately, these resources don’t grow with our population, so we need to find a way to increase productivity per unit of land (2). Ideally, using less water and potentially harmful pesticides.

Biotechnology offers innovative solutions that support sustainable agriculture practices to not only enhance food production, but also increase nutritional value and safety of our food supply.

Biotechnology in Agriculture: Enhancing Crop Yield and Resilience:

For much of the history of agriculture, breeding programs have involved selectively breeding desirable traits to increase yield, quality, and resilience. In the age of biotechnology, agriculturalists are revolutionizing this practice with the help of cloning and CRISPR technologies.

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Rooted in Resilience: The Future of Pest-Resistant Crops

Sunlight illuminating crops growing in a field

Farmers everywhere strive to protect their crops and ensure a stable food supply while minimizing environmental harm. A promising approach to achieving this leverages a plant’s built-in defense mechanisms, reducing the need for chemical interventions. Many geneticists and agronomists lean on technologies that can automate and streamline nucleic acid extraction and pathogen detection to identify naturally pest resistant crops and, ultimately, keep up with the changing agricultural landscape.  

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Streamlining Disease Diagnostics to Protect Potato Crops

A potato farmer holds a handful of potatoes. Scientists are working to protect potato crops from disease.
The WSPCP works to provide seed potato growers with healthy planting stock

The mighty potato—the Midwest’s root vegetable of choice—is susceptible to a variety of diseases that, without proper safeguards, can spell doom for your favorite side dishes. Founded in 1913 and housed in the Department of Plant Pathology at the University of Wisconsin-Madison, the Wisconsin Seed Potato Certification Program (WSPCP) helps Wisconsin seed potato growers maintain healthy, profitable potato crops year-to-year through routine field inspections, a post-harvest grow-out and laboratory testing.

While WSPCP conducts visual inspections for various seed potato pathogens, their diagnostic laboratory testing is primarily focused on viruses such as Potato virus Y (PVY), which can cause yield reduction and tuber defects, along with select bacteria such as Dickeya and Pectobacterium species that cause symptoms like wilting, stem rot and tuber decay.

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