TB Vaccine News

Mycobacterium tuberculosis (Ziehl Neelsen stain). Photo credit: Centers for Disease Control and Prevention.
Mycobacterium tuberculosis (Ziehl Neelsen stain). Photo credit: Centers for Disease Control and Prevention.
A paper published last week in Science Translational Medicine describes promising results from a phase 1 clinical trial of a new anti-tuberculosis vaccine. The vaccine, composed of a human Adenoviral vector expressing a Mycobacterium tuberculosis antigen, generated an immune response in people with and without previous exposure to the current anti-tuberculosis (BCG) vaccine.

Mycobacterium tuberculosis, discovered by Robert Koch in 1882, is the organism that causes tuberculosis—commonly known as TB. After introduction of the BCG (Bacille Calmette-Guérin ) vaccine in 1919 and antibiotic treatment in the 1950s, the hope was that TB would be finally consigned to history—that Mycobacteruim tuberculosis would be a name only associated with the pre-antibiotic era and would not be a part of the 21st century world. However, over the last 30 years the emergence of multi-drug resistance and the worldwide HIV epidemic have led to the re-emergence of TB to the point where the following statements are true: Continue reading “TB Vaccine News”

Don’t Let Ribonucleases Ruin Your Week(end): Establish a Ribonuclease-free Environment

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My very first job in science was in a lab that worked exclusively with RNA, and it was only after I moved on to a different job that I learned just how much different the world of DNA research is from that of RNA. When working with DNA, for example, you rarely if ever have the sample you have labored over reduced to a fuzzy blur at the bottom of a gel because it has been degraded beyond rescue. With RNA, unfortunately, this happens all too frequently. In fact, a labmate of mine once put up a poll on the door to our lab asking if it was better to discover that your RNA sample was degraded on a Monday or a Friday.

The culprits in this scenario are Ribonucleases (RNases). They are everywhere. They are incredibly stable and difficult to inactivate. And, if you work with RNA, they are your enemy. Take heart though, they can be defeated if you follow some pretty simple steps.

Continue reading “Don’t Let Ribonucleases Ruin Your Week(end): Establish a Ribonuclease-free Environment”

Healthy Lifestyles: Good for You and Your Telomeres Too

DNA in a test tubeWe all know that a healthy lifestyle (diet high in whole foods and low in fat, moderate exercise, managing stress and good social support) is good for us. In fact I will go so far as to say that it isn’t even news that these things help our health and well-being.  What is news, or at least newly published, is that these changes may also have a positive effect on telomerase activity and telomere length (1). Continue reading “Healthy Lifestyles: Good for You and Your Telomeres Too”

Is This What a Scientist Looks Like?

scientists-at-workI am the mother of a six-year-old girl who loves to get magazines in the mail. For several years my daughter has received an enjoyed popular kids’ science/international culture magazine. The stories are short and simple, and this magazine usually does a good job of presenting factual information in easy-to-digest forms. Each magazine comes with a set of animal cards, which we have diligently collected.

However, the latest issue that came to our mailbox really got me thinking. The final pages featured artwork by the young readers. I love the idea of featuring the work of the readers.  Usually, my daughter loves seeing what other children her age from around the world draw and take pictures of, and sometimes we have some pretty interesting discussions about the work.

This time though we didn’t spend much time talking about the art work. She wasn’t particularly interested, and I wasn’t sure I what I thought. But I may have missed a teachable moment. The theme for the pages was a Halloween-minded “spooky science”, and all of the pictures were of “mad scientists” alone at work doing presumably nefarious things in their laboratories. Of the eight drawings pictured, six of them pictured scientists that were human, and five of the humans were male. All of them were pale-skinned. The sole female scientist, whose lab featured a certificate with the words “monster maker”, was drawn by a girl. The ages of the children submitting the work ranged from 9 to 14. Continue reading “Is This What a Scientist Looks Like?”

Trypsin/Lys-C Mix: Alternative for standard trypsin protein digestions

Trypsin/Lys-C Mix, Mass Spec Grade, is a mixture of Trypsin Gold, Mass Spectrometry Grade, and rLys-C, Mass Spec Grade. The Trypsin/Lys-C Mix is designed to improve digestion of proteins or protein mixtures in solution.It is a little known fact that trypsin cleaves at lysine residues with lesser efficiency than at arginine residues. Inefficient proteolysis at lysine residues is the major cause of missed (undigested) cleavages in trypsin digests.

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Supplementing trypsin with Lys-C enables cleavage at lysines with excepetional efficiency and specificity. Following the conventional trypsin digestion protocol (i.e., overnight incubation at nondenaturing conditions, reduction,alkylation, 25:1 protein:protease ratio [w/w], mix and incubate overnight at 37°C.) Replacing trypsin with Trypsin/Lys-C Mix in this conventional protocol leads to multiple benefits for protein analysis including more accurate mass spectrometry-based protein quantitation and improved protein mass spectrometry analytical reproducibility.

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What Came First: LP or the Cow? Genetic and Cultural Co-evolution of Lactase Persistence and Dairying

Cow with milk.The ability for adults to digest the milk sugar, lactose, is often referred to as lactase persistence (LP), describing the continued (persistent) production of lactase into adulthood. LP is an autosomal dominant trait that is most often associated with a T allele situated 13,910 base pairs (–13,910*T allele) upstream of the lactase gene, LCT. Archaeogenetic data indicates that pre- and early Neolithic populations were largely LP-negative, and that the frequency of the LP phenotype rose dramatically in Europe around 8,000 years ago, coinciding with the Neolithic transition from a hunter-gather to an agricultural-based lifestyle (1) and the appearance of domesticated dairying animals. Today roughly 35% of adults are lactose persistent. The frequency varies dramatically by geographic region, from a high prevalence in Europe (89–90%) and to a relatively low prevalence in the eastern Mediterranean (15%)(1). The spread of lactase persistence is an often cited example of gene-culture co-evolution. You can’t separate the history of domestic dairying and the evolution of lactase persistence, but scientists are still trying to understand how these two worked together. Continue reading “What Came First: LP or the Cow? Genetic and Cultural Co-evolution of Lactase Persistence and Dairying”

The Power of One: Revealing Microbial Dark Matter Using Single-Cell Sequencing

abstract digital backgroundMicroorganisms; they are the most abundant form of life. They are all around us, silent, unseen and undetected. The number of ‘species’ of archaea and bacteria climbs every year and is predicted to rise well past one million (1). Despite their abundance, we know very little about all but a small fraction of these diverse cellular life forms because we are unable to cultivate most in a laboratory setting. In fact, 88% of all our microbial isolates belong to just four bacterial phyla (Proteobacteria, Firmicutes, Actinobacteria and Bacterioidetes; 2). The remaining branches of the microbial phylogenetic tree range from underrepresented to virtually unknown and are collectively referred to as “microbial dark matter”.

If you want to target those shadowy, ill-defined branches where exotic and underrepresented organisms belong, you go to environments that might harbor them. Towards this end, Christian Rinke and a large coalition of co-authors collected samples from a wide and varied choice of habitats including the South Atlantic tropical gyre, the Homestake Mine in South Dakota, the Great Boiling Spring in Nevada, the sediment at the bottom of the Etoliko Lagoon in Greece and even a bioreactor. Continue reading “The Power of One: Revealing Microbial Dark Matter Using Single-Cell Sequencing”

ProteaseMAX Surfactant: Enhanced In-solution Digestion Applications

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The primary advantage of ProteaseMAX™ Surfactant is that it improves identification of proteins in gel by enhanced protein digestion, increased peptide extraction, and minimized post digestion peptide loss. However, ProteaseMAX™ Surfactant can also facilitate in-solution digestion protocols.

ProteaseMAX™ Surfactant offers two major benefits for digesting proteins in solution.

Continue reading “ProteaseMAX Surfactant: Enhanced In-solution Digestion Applications”

Advice to Young Scientists: Obey the Passion

Do you remember what it was that first inspired in you your life’s passion for science? Was it collecting bugs, frogs or other creatures as a child? Or maybe that first chemistry set—the one that had your mother hovering behind you with a fire extinguisher. Perhaps it was a parent or teacher that first sparked something in you that never dimmed. Whatever, or whoever, it was that first kindled your interest in science, no doubt there have been times when you wished that someone would offer you some advice on how to navigate through the modern, rapidly changing world of science.

Written letter

On this past Saturday, I took a trip to my local library on a quest to get just exactly that. To be specific, I was going to check out a copy of Edward O. Wilson’s Letters to a Young Scientist (1). Although I haven’t had time to read more that the first chapter, the advice that he offers at the end of that chapter struck me as good advice to any young (or not so young) person:

It is quite simple: put passion ahead of training. Feel out in any way you can what you most want to do in science, or technology, or some other science-related profession. Obey that passion as long as it lasts.

Wilson is speaking specifically to young scientists, but it seems to me that this main point is more universal than that: It applies to the not-so-young scientist and the nonscientist as well.

I am really looking forward to reading the rest of the book, but for today I am challenging myself as well as all of you to “obey the passion”. Even if you can only do it for one day, put aside the demands of career or school, find that passion that started you on your journey in science and follow it!

Reference

  1. Wilson, E.O. (2013) Letters to a Young Scientist. Liveright Publishing, New York.

Science and the Wonderful Why

Curiosity.“Why? Why? Why?” Anyone who has been around small children has experienced the monotonous, often aggravating, seemingly endless barrage of the “W” word. Why does soap make bubbles? Why do feathers float and acorns fall to the ground? Why are baths important? Why are those flowers purple? Why can’t I be purple? Why do tigers have stripes and leopards have spots and lions don’t have anything (majestic manes not withstanding)? Why can rocks bounce (skip) off water? Why didn’t my rock bounce? Why does the plant in the window bend toward the light? Why are my eyes blue and my brother’s eyes brown?

It would seem that from a very young age people are hard wired to think like a scientist. It is not enough to simply know a feather will float slowly to the ground while the acorn will plummet, or that plants turn their leaves toward the sunlight. We want to know why.

I have watched nieces and nephews as well as my own children pass through the “Wonderful Why?” stage, and I have noticed that there is often a predictable progression to the questions: “Why do plants turn their leaves toward the light?” is quickly followed by: “How do they move their leaves to face the light?” and then “What if we took away the light?”

Ray Bradbury said,

Touch a scientist and you touch a child.

As children we are all scientists. It is just that some of us never grow up.