biology

Light Has a Favorite Color, But It’s Complicated

Posted on by Elise Johnson

Last spring, my niece and I made a trip to a home improvement store to put together a Mother’s Day planter for my sister. My niece had a clear vision: my sister’s favorite color is blue, so we were going to buy blue flowers. We walked every aisle of the garden center. We checked the annuals, the perennials, and the hanging baskets then left with purple, red, and a grumpy 7-year-old.

It turns out we were not up against a bad selection. We were up against biology.

The Problem with Blue

Blue is one of the rarest colors in the natural world. The food industry is currently finding that out the hard way. There is a good chance you have eaten something blue today. Maybe it was the frosting on a birthday cake, the coating on some M&M’s® candies, or the sports drink in your refrigerator. That blue almost certainly came from a petroleum-based synthetic dye, and for the first time in decades, the food industry is being asked to find something better.

The FDA banned Red Dye No. 3 in January 2025, and pressure has been building around the remaining synthetic dyes ever since, including Blue No. 1 and Blue No. 2. Major food brands have begun announcing plans to reformulate.

There is just one problem. Blue is genuinely, stubbornly hard to make in nature. It turns out that blue has almost nothing to do with color, and almost everything to do with light.

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Myths, Misconceptions and Debated Theories in Biology

Posted on by Shannon Sindermann

Research studies and novel discoveries continually reshape our understanding of the natural world, often refining—and sometimes contesting—prevailing scientific theories. While this influx of new information is important for expanding knowledge, it can also give rise to myths and misconceptions stemming from biases, media misrepresentations and overgeneralizations. In this blog, we’ll explore misconceptions that blur the lines between fact and fiction, some scientific myths that just won’t go die and theories that scientists can’t stop debating.

Humans Only Use 10% of Their Brain 

This myth, frequently perpetuated through movies like Lucy with Scarlett Johansson and Limitless with Bradely Cooper, has ambiguous roots. Some attribute this pseudoscience to Albert Einstein, despite no recorded record of such a claim, while others associate it with a misinterpretation of William James and his “Reserve Energy Theory” (8). 

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An Ambitious Endeavor: The Human Proteoform Project

Posted on by Riley Bell

On November 15, 2021, Science Advances announced the launch of The Human Proteoform Project. The ambitious project, led by the Consortium for Top-Down Proteomics, aims to address a critical next step in disease research. This means developing new technologies to outline a complete set of protein forms based on the ~20,000 genes in the human genome.

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A Quick Method for A Tailing PCR Products

Posted on by Isobel Maciver
PCR experiment and products, pipette tip, tube in researcher's hand.
PCR is a common technique used in research labs to amplify DNA.

Some thermostable DNA polymerases, including Taq, add a single nucleotide base extension to the 3′ end of amplified DNA fragments. These polymerases usually add an adenine, leaving an “A” overhang. There are several approaches to overcome the cloning difficulties presented by the presence of A overhangs on PCR products. One method involves treating the product with Klenow to create a blunt-ended fragment for subcloning. Another choice is to add restriction sites to the ends of your PCR fragments. You can do this by incorporating the desired restriction sites into the PCR primers. After amplification, the PCR product is digested and subcloned into the cloning vector. Take care when using this method, as not all restriction enzymes efficiently cleave at the ends of DNA fragments, and you may not be able to use every restriction enzyme you desire. There is some useful information about cutting with restriction sites close to the end of linear fragments in the Restriction Enzyme Resource Guide. Also, some restriction enzymes require extra bases outside the recognition site, adding further expense to the PCR primers as well as risk of priming to unrelated sequences in the genome.

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How Do You Defrost the Lab Freezer?

Posted on by Promega

When I was in the lab, we usually started with an elaborate system of borrowed hairdryers and old chemistry ring stands. What is your preferred method of attacking a frost-full freezer?
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How Is a Molecular Biologist Like a Computer Programmer?

Posted on by Maciek Smuga-Otto

My wife, the molecular biologist, tells me she spends her days “at the bench” and “in the hood.” There, she works with cells, plasmids, RNA, enzymes and buffers, incubators, water baths, columns, gels, filters and spectrophotometers. She transfers various quantities of liquids into and out of plastics and glassware. At least, that’s what I understand when I ask her, “how was your day?”

I can’t really understand her fascination with all of this, but then I don’t have to: I’m an app developer, a programmer who designs and builds applications for smartphones and tablets. My work day consists of sitting in front of a laptop, cranking out code. There’s the occasional break afforded by meetings and presentations, writing up design documents, sketching out how a user interface might look like. Then it’s back to the computer, and programming.

But in spite of these differences, there is a critical aspect of my wife’s work that, whenever she speaks of it, I immediately recognize in my own professional life: We both rely extensively on kits and components, and doing so profoundly affects the way that we approach our jobs. Continue reading “How Is a Molecular Biologist Like a Computer Programmer?”

Mate Selection at Frog Cocktail Parties: Keep it Short, Low, Loud, and Stand Out from the Crowd (Oh, and have a colorful vocal sac, too)

Posted on by Michele Arduengo, PhD
Hyla versicolor (Copes grey treefrog) Photo credit: LA Dawson wikipedia
Hyla versicolor (Copes grey treefrog) Photo credit: LA Dawson wikipedia

When I lived in Sioux City, IA, I had the opportunity of hanging out with a zoologist who studied the Plains Spadefoot Toad (Spea bombifrons). I would go out with her on nighttime listening surveys, and we would slowly drive the gravel farm roads in the middle of nowhere, weaving from one side to the other as we dodged hopping frogs and toads, and I would be amazed as the clamor of these calling anurans rattled my eardrums.

Just last week in Madison, as I took my lunchtime walk, I passed by a roadside wetland, and my ears filled with the calls of Chorus frogs, singing with all their one-inch might in hopes of attracting a mate. And, later that evening, as my daughter and I weeded our garden at home, I heard the crisp bell trill of two American toads carrying over the chorus frogs in the neighborhood.

Congresses of snoring Spadefoot Toads. In-your-face Copes Gray Tree Frogs. Peepers, Chorus Frogs and and Leopard Frogs. The evenings are noisy when the temperatures moderate and these frogs and toads come out to call. The din of the local roadside wetland begins to resemble the din of the local roadside bar, in more ways than one as it turns out.

Continue reading “Mate Selection at Frog Cocktail Parties: Keep it Short, Low, Loud, and Stand Out from the Crowd (Oh, and have a colorful vocal sac, too)”