Gut Microbes and Hypertension: Demonstrating a Causal Link

Most of us are aware that the human body is covered by and full of microorganisms. And we understand that most of these microorganisms are helpful, both in terms of competition with and protection against invading microorganisms, and in the gut, as agents of digestion.

Bacillus subtilis, an example of Firmicutes, and not a good gut microbe. By Y tambe (original uploader) - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=49528
Bacillus subtilis, an example of Firmicutes, and not a good gut microbe. By Y tambe (original uploader) – Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=49528

In the past decade, however, research has brought compelling details implicating gut microbes in obesity, cancer, insulin resistance and such central nervous system disorders as depression, austism spectrum disorder and multiple sclerosis (Adnan, S. et al.). Yet the mechanisms and details of these associations have not been fully demonstrated.

Gut microbes have been proven to be connected to thickening of heart vasculature, known as atherosclerosis. Researchers have demonstrated that bacteria metabolize choline and L-carnitine from food to trimethylamine, which crosses the gut barrier into circulation and reaches the liver. In the liver, trimethylamine is metabolized to the atherogenic molecule triethylamine-N-oxide (Gregory, J.C. et al., Brown and Hazen). These studies are among the few that provide a direct connection between gut microbes and a pathological condition.

Continue reading “Gut Microbes and Hypertension: Demonstrating a Causal Link”

Vitamin D: Power in Cancer Prevention?

This and vitamin D should get your attention.
This and vitamin D should get your attention.

Have you ever noticed that after a good long day outdoors, maybe hiking, at the beach or even working in the yard, you feel really strong and healthy, maybe even more relaxed than after an indoor session in front of the telly or computer? Maybe a February trip to someplace sunny like Mexico or the Canary Islands has given you renewed zest for your normal tasks?

While rest and a change of scenery is never a bad thing, time outdoors and in the sunshine might have gained for you something more than rest and relaxation. If it included a little UVB irradiation, your time outdoors may have increased your serum vitamin D level. And though itโ€™s been presumed for years, we now have proof that higher serum vitamin D3 levels correlate with a decreased incidence of certain cancers. Continue reading “Vitamin D: Power in Cancer Prevention?”

Inflammasome Research: A Tool to Aid Progress

Inflammasomes: A Few Basics

Inflammasomes are protein complexes composed of immune system receptors and sensor molecules. These complexes can respond to both infectious organisms and molecules derived from host proteins. When activated, a series of receptors and molecules signal via either pathogen-associate molecular patterns (PAMPs) induced by microbial pathogens, or danger-associated molecular patterns (DAMPs) induced as a result of endogenous stressors; the common next step in signaling is through pattern recognition receptors (PRR).

Inflammasome diagram.
Innate immune response in inflammation; a basic diagram.

Inflammasome activation is integral to the host immune response in mice and humans (1). The activation results in signaling that activates the caspase-1 scaffold, causing release of immune mediators such as interleukins IL-1ฮฒ and IL-18. So, whether inflammation is host tissue- or pathogen-induced, inflammasome activation results in a cascade of receptor signaling and mediator release, of which caspase-1 is a critical component.

Continue reading “Inflammasome Research: A Tool to Aid Progress”

To Meditate Perchance to Dream

First the disclosure: this blog is of course about Me.

But itโ€™s also about You. And yours. Because as you know, weโ€™ve become a culture that does not sleep.

Why donโ€™t we sleep? I like to think that it isย an evolutionary adaptation; not sleeping, after all, allows us more time forย Facebook.

Or Etsy for you makers. Or Amazon for you shoppers. And letโ€™s not forget our middle, high school and college students. Do they even have classrooms anymore, or are lectures all online (onย screens)?

One tired pony. By Rachel C from Scotland (Flickr) [CC BY 2.0 , via Wikimedia Commons
One tired pony. By Rachel C from Scotland (Flickr) [CC BY 2.0 , via Wikimedia Commons
Honestly, theย evolutionary adaptation idea comes from how we live and work today.ย And no, this is not another rant/lecture on the color of light emitted by whatever non-cathode ray tubes are in our phones or tablet-like devices.

Itโ€™s just that just working in our very busy online/wired world, jumping from web page to project management software, to big-screens in meetings has us adapted to being ย on:ย capital “O” capital “N”.

This multi-multitasking has grown (for me) a new type of neurons that areย not happy unless they are gleaning new information from a screen, all the time. And these neurons donโ€™t stop working when the screen is gone; no, they continue seeking and trying to process. For me, if thereโ€™s no screen to look at, the neurons ping-pong around behind my eyeballs, looking and searching, as if to say, โ€œInput missing! Input missing!โ€

The result can be hours in bed sans sleep; it seems the racket these neurons make keeps all the other neurons up. Continue reading “To Meditate Perchance to Dream”

Studying Mitochondrial Fission with NanoBiT Complementation Assay

3D depiction of NanoBiT Protein Complementation

Updated February 15, 2021

If youโ€™re interrogating two proteins to understand the conditions under which they interact, a complementation system enables you to tag each protein. Interaction of the tagged proteins facilitates the complementation of the subunits, resulting in a signal. Here we discuss the NanoBiT complementation assay and describe its use to study mitochondrial fission.

Continue reading “Studying Mitochondrial Fission with NanoBiT Complementation Assay”

How Fruit Flies (and maybe Pigeons?) Navigate; A New Report

A rock dove, similar in plumage to a pigeon.
A rock dove, similar in plumage to a pigeon.

Several years ago an intriguing story of successful navigation in complex situation, by pigeons, the birds most often compared to rats, caught my eye.

Our backyard once had a coop full of pigeons, so Iโ€™m not a total stranger to their navigation abilities (nor am I a pigeon expert). My favorites were the tumbling pigeons.

But it didnโ€™t take much time researching that article from 2012, to learn that one of the more hotly debated how-do-they-do-it topics is animal navigation, in particular, the ability of pigeons to navigate back to home/point A when released at point B.

So when it appeared online today, in Nature Materials, the story โ€œA Magnetic Protein Biocompassโ€ caught my eye.

Continue reading “How Fruit Flies (and maybe Pigeons?) Navigate; A New Report”

About the Development of an Improved BRET Assay: NanoBRET

"Protein BRD4 PDB 2oss" by Emw - Own work. Licensed under CC BY-SA 3.0 via Wikimedia Commons - https://commons.wikimedia.org/wiki/File:Protein_BRD4_PDB_2oss.png#/media/File:Protein_BRD4_PDB_2oss.png
“Protein BRD4 PDB 2oss” by Emw – Own work. Licensed under CC BY-SA 3.0 via Wikimedia Commons – https://commons.wikimedia.org/wiki/File:Protein_BRD4_PDB_2oss.png#/media/File:Protein_BRD4_PDB_2oss.png

One of the more exciting reporter molecules technologies available came onlineย in the past year, with the launch of the Promega NanoBRETโ„ข technology. While itโ€™s easy for me, a science writer atย Promega, to brag, seriously, this is a very cool protein interactions tool.

A few of the challenges facing protein-protein interactions researchersย include:

  • The ability to quantitatively characterize protein-protein interactions
  • Ability to examine protein-protein interactions in situ, in the context of the living cell

A goal of the NanoBRETโ„ข developers was to improve the sensitivity and dynamic range of traditional BRET technology, in order to address these challenges.

In May 2015 these researchers published an article outliningย their efforts to create NanoBRET technology in ACS Chemical Biology, inย an article entitled, โ€œNanoBRETโ€”A Novel BRET Platform for the Analysis of Protein-Protein Interactionsโ€. Here is a brief look at their work.

Continue reading “About the Development of an Improved BRET Assay: NanoBRET”

Sequencing the Octopus Genome: Invertebrate Intelligence Explained?

In a Letter in Nature magazine last week (August 13, 2015), researchers published surprising findings from a genome analysis of the octopus. As a result, we now know that this invertebrate has more than just behavioral oddities with which to amaze.

In their publication, C. Albertin et al. report the results of genome sequencing of the California two-spot octopus, Octopus bimaculoides. They did not find the predicted whole-genome duplication, but rather an unexpectedly large genome with many rearrangements, and two gene family expansions that were previously thought to exist only in vertebrates.

Califonia two spot octopus. Image by Jeremy S. Taken at Santa Monica Aquarium. Used via Creative Commons license, Wikimedia.
Califonia two spot octopus. Image by Jeremy S. Taken at Santa Monica Aquarium. Used via Creative Commons license, Wikimedia.

The Research
Albertin et al. sequenced the O. bimaculoides genome using a whole-genome shotgun approach, and then annotated it using extensive transcriptome sequences from 12 tissues. They estimate that the genome assembly incorporated 97% of protein-coding sequences, and 83% of the entire 2.7gigabase genome. The remaining sequence was composed largely of repetitive elements. Continue reading “Sequencing the Octopus Genome: Invertebrate Intelligence Explained?”

A Reason for Ribonuclease: From Laboratory Nuisance to Cancer Therapeutic

"RNase A". Licensed under CC BY-SA 2.5 via Wikimedia Commons - https://commons.wikimedia.org/wiki/File:RNase_A.png#/media/File:RNase_A.png
“RNase A”. Licensed under CC BY-SA 2.5 via Wikimedia Commons – https://commons.wikimedia.org/wiki/File:RNase_A.png#/media/File:RNase_A.png

RNase, back in the early 1990s, posed a serious threat to laboratories working withย RNA isolation. My graduate work involved isolating RNA from the tissues of Lyme disease-infected mice and hamsters. We struggled to DEPC-treat glass and plasticware, or autoclave anything that could be autoclaved, kept tissues cold during RNA harvest and held our breaths (truly, as aerosol could be another source of ribonuclease) until PAGE proved usย successful in RNA isolation.

Ribonuclease (RNase) was omnipresent and the arch rival of ourย work,ย across several species,ย due to its RNA destroying abilities.

Now, aย July 13, 2015 publication by researchers at the University of Wisconsin-Madison provided both a catch-up for this former lab rat on modern day research with and knowledge of RNase, as well asย an exciting look at what mayย be a real purpose for this RNA-destroying molecule: RNase has moved to clinical trials due to the discovery of itโ€™s cytotoxicity for cancer cells.

Rainesโ€™ group in the Department of Chemistry at UWI-Madison published in ACS Central Scienceย their findings on the ligand that RNaseย 1 uses to attach to human cancer cells, in theย article, โ€œHuman Cancer Antigen Globo H is a Cell-Surface Ligand for Human Ribonuclease 1โ€. Continue reading “A Reason for Ribonuclease: From Laboratory Nuisance to Cancer Therapeutic”

Your Health has a Season

Photo of pasque flowers
Pasque flowers in a northern hemisphere garden in spring.

As the seasons change so does the general state of health for many of us. The further from the equator we live, the more pronounced these effects are. For instance, did you know that blood pressure elevation for many people increases with the distance they live from the equator, an effect most pronounced during the low sunlight season (winter in the northern hemisphere)?

Aย report published online in Nature Communications May 12, showsย evidence ofย changes in cellular physiology with the seasons. Todd et al. published a study entitled: โ€œWidespread seasonal gene expression reveals annual differences in human immunity and physiologyโ€, where they note,

โ€œHere we find more than 4,000 protein-coding mRNAs in white blood cells and adipose tissue to have seasonal expression profiles, with inverted patterns observed between Europe and Oceania.โ€

Letโ€™s Take a Look at the Research

Todd et al. looked at ethnically and geographically distinct populations, including subjects from Australia, The Gambia (Africa), Germany, the UK and Iceland. Individuals from the various studies were infants, adults with type 1 diabetes and asthmatics in the range of 18-83 years of age.ย The authors analyzed RNA from peripheral blood mononuclear cells and subcutaneous adipose tissue biopsies, as well as examining peripheral blood cell counts and circulating levels of proinflammatory cytokines. Continue reading “Your Health has a Season”